I would have actually welcomed a proper ultimization of the clone saga. The original idea was pretty interesting, just heavily flawed in the writing department.
I think it would have worked if they just made two clones, one of them a failed project later becoming Kaine, and the other being the Scarlet Spider. As long as you have none of that Reilly is Parker nonsense, and keep it clear from the start just who is the clone, then I think it would be interesting. Perhaps SS could have stolen Spideys limelight, and the two could have competed to comedic effect while eventually facing the threat of Kaine.
And as long as Miles Warren didn't become a hairy lame Joker rip off.